Package index
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apeData - ApeData Ape phylogeny in ape format, monophyletic clades, and maximum and minimum ages
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estimateBound() - Estimate a Uniform Distribution for MCMCtree
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estimateCauchy() - Estimate Cauchy Distribution for MCMCtree
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estimateFixed() - Fixed Age for MCMCtree analysis input
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estimateGamma() - Estimate Gamma Distribution for MCMCtree analysis
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estimateSkewNormal() - Estimate Skew Normal for MCMCtree analysis
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estimateSkewT() - Estimate Skew-t Distribution for MCMCtree analysis
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estimateUpper() - Estimate Upper Age for MCMCtree analysis
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MCMC.tree.plot() - Plot time-scaled phylogenies
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MCMCtreePhy() - MCMCtreePhy
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MCMCtree.output - MCMCtree.output
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nodeToPhy() - Add Node Constraints to Tree in MCMCtree Format
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plotMCMCtree() - Plot distribution from MCMCtree node estimations
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priorPosterior() - priorPosterior
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readMCMCtree() - Read MCMCtree output tree into R
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tipDes() - Find Descendent Tips From A Common Ancestor